| AAP_BAP_NitroPath_2014 |
Nitrogen nutrition and pathogen susceptibility: priming by metabolism. |
Arabidopsis thaliana |
rosette |
RNA-Seq |
BotrytisxN |
normal vs disease comparison |
32 |
| ADT03-02_Leaf_Flower-Bud |
Genes expressed in flowers and leaves |
Arabidopsis thaliana |
flower |
Arrays |
Leaf_Flower-bud |
organ comparison |
2 |
| ADT04-03_FDH_Drought |
Analysis of FDH (Formate dehydrogenase) insertion mutants in response to drought stress. |
Arabidopsis thaliana |
rosette |
Arrays |
Drought stress |
gene knock out,treated vs untreated comparison |
14 |
| ADT05-01_Hormon_cells |
Effect of the Auxin/Cytokinin ratio on the transcriptome of stem cells |
Arabidopsis thaliana |
cell culture/primary cell |
Arrays |
Cyt_Aux_Balance |
dose response |
21 |
| ADT05-04_DRN |
Embryonic patterning in Arabidopsis thaliana |
Arabidopsis thaliana |
protoplast |
Arrays |
DRN/DRN-L expressing cells vs non-epressing cells |
genotype comparaison |
12 |
| ADT05-04_DRN |
Embryonic patterning in Arabidopsis thaliana |
Arabidopsis thaliana |
seed |
Arrays |
mutant vs wildtype |
gene knock out |
4 |
| ADT06-01_ESR1-DRN_dexamethasone |
Transcriptomic study of the transcription factor ESR1/DRN. |
Arabidopsis thaliana |
whole plant |
Arrays |
ESR1-DRN |
normal vs transgenic comparaison |
12 |
| ADT06-02_Pollen |
Comparison between Columbia and WS pollen RNAs. |
Arabidopsis thaliana |
pollen |
Arrays |
Pollen |
ecotype comparison |
2 |
| ADT06-03_MKK2-cold |
Transcriptomic analysis of mkk2 upon Cold stress |
Arabidopsis thaliana |
whole plant |
Arrays |
Mutants |
gene knock out |
14 |
| ADT06-03_MKK2-cold |
Transcriptomic analysis of mkk2 upon Cold stress |
Arabidopsis thaliana |
aerial |
Arrays |
MKK2_mkk2_and_WRKY19_cold_time_course |
time course,wt vs mutant comparison |
28 |
| ADT06-04_miRNA_Nitrogen |
To discover miRNA implied following a Nitrogen starvation and after re-supply. |
Arabidopsis thaliana |
roots |
Arrays |
miRNA_Nitrogen |
time course |
8 |
| ADT07-01_miRNA-N |
miRNA and Nitrogen starvation and resupply |
Arabidopsis thaliana |
roots |
Arrays |
Nitrogen starvation |
time course |
16 |
| ADT07-02_C-N_Cells |
C/N balance in cells |
Arabidopsis thaliana |
cell culture/primary cell |
Arrays |
Cells |
dose response |
18 |
| ADT07-03_miR398-mutants |
Analysis of miR398 mutants. |
Arabidopsis thaliana |
rosette |
Arrays |
miR398 mutant analysis |
gene knock out |
8 |
| ADT08-01_upp |
Trancriptome analysis of the Arabidopsis upp-1/2 mutants |
Arabidopsis thaliana |
whole plant |
Arrays |
ADT08-01_upp |
wt vs mutant comparison |
16 |
| ADT09-02_fireman |
Impact of the fireman mutation in the Erwinia amylovora response of Arabidopsis |
Arabidopsis thaliana |
aerial |
Arrays |
Fireman vs WT Erwinia infection |
normal vs disease comparison,normal vs transgenic comparaison |
8 |
| ADT10-01_WIP2 |
Transcriptome analysis of WIP overexpressing plants |
Arabidopsis thaliana |
seedling |
Arrays |
WIP overexpressing plants |
gene knock in (transgenic),normal vs transgenic comparaison |
9 |
| ADT10-02_35sUPRT |
Transcriptomic analysis of overexpression URPT gene. |
Arabidopsis thaliana |
whole plant |
Arrays |
UPRT overexpression |
normal vs transgenic comparaison |
10 |
| ADT12-01_UPRT |
Plant RABT n°1 |
Arabidopsis thaliana |
whole plant |
Arrays |
Plant RABT n°1 |
treated vs untreated comparison |
8 |
| AF01_Cul3_a |
Molecular and functional characterisation of Arabidopsis Cullin 3A |
Arabidopsis thaliana |
whole plant |
Arrays |
Comparison |
normal vs disease comparison |
6 |
| AF01_Cul3a2_Cul3b |
Study of the function of SCF complexes in Arabidopsis. |
Arabidopsis thaliana |
seedling |
Arrays |
comparison WS vs CRB (Cul3a) |
wt vs mutant comparison |
6 |
| AF01_Cul3a2_Cul3b |
Study of the function of SCF complexes in Arabidopsis. |
Arabidopsis thaliana |
seedling |
Arrays |
comparison Col0 vs 003D |
wt vs mutant comparison |
6 |
| AF09_HCA |
Molecular characterization of a mutant altered in the vascular system organization (hca: high cambial activity). |
Arabidopsis thaliana |
seedling |
Arrays |
comparison mutant HCA vs WS |
wt vs mutant comparison |
6 |
| AF09_lignin |
Lignin mutants and UV stress |
Arabidopsis thaliana |
whole plant |
Arrays |
DML6 |
normal vs disease comparison,treated vs untreated comparison |
8 |
| AF09_lignin |
Lignin mutants and UV stress |
Arabidopsis thaliana |
whole plant |
Arrays |
EBL87 |
normal vs disease comparison,treated vs untreated comparison |
4 |
| AF09_lignin |
Lignin mutants and UV stress |
Arabidopsis thaliana |
stem |
Arrays |
stem developement |
time course |
3 |
| AF09_lignin |
Lignin mutants and UV stress |
Arabidopsis thaliana |
stem |
Arrays |
CCR |
normal vs disease comparison |
4 |
| AF09_lignin |
Lignin mutants and UV stress |
Arabidopsis thaliana |
stem |
Arrays |
CD |
normal vs disease comparison |
6 |
| AF09_lignin |
Lignin mutants and UV stress |
Arabidopsis thaliana |
stem |
Arrays |
BX |
normal vs disease comparison |
4 |
| AF13_PLP2 |
Functionnal analysis of lipid acyl hydrolases in Arabidopsis antimicrobial defense |
Arabidopsis thaliana |
rosette |
Arrays |
PLP2 Paraquat |
gene knock in (transgenic),time course |
7 |
| AF13_PLP2 |
Functionnal analysis of lipid acyl hydrolases in Arabidopsis antimicrobial defense |
Arabidopsis thaliana |
rosette |
Arrays |
PLP2 Bc 1 |
normal vs rnai mutant comparaison,time course,treated vs untreated comparison |
9 |
| AF13_PLP2 |
Functionnal analysis of lipid acyl hydrolases in Arabidopsis antimicrobial defense |
Arabidopsis thaliana |
rosette |
Arrays |
PLP2 Botrytis cinerea 2 |
gene knock in (transgenic),normal vs rnai mutant comparaison,time course |
5 |
| AF24_CytP450_Cyp98A3 |
comparison mutant cytP450 vs control WS |
Arabidopsis thaliana |
whole plant |
Arrays |
polyphenol |
wt vs mutant comparison |
2 |
| AF30_Starch_circadian_rythm |
The impact of some genes mutations implicated in the amidon metabolism |
Arabidopsis thaliana |
rosette |
Arrays |
Circadian cycle |
time course |
10 |
| AF30_Starch_circadian_rythm |
The impact of some genes mutations implicated in the amidon metabolism |
Arabidopsis thaliana |
rosette |
Arrays |
Double mutant SBE |
gene knock out |
12 |
| AF31_HAF2_GCN5 |
histone acetylation required for gene expression during germination |
Arabidopsis thaliana |
seedling |
Arrays |
Comparison WS vs HAF2_GCN5 |
wt vs mutant comparison |
9 |
| AF31_mgoun3 |
Leaves transcriptome analysis of mgo3 mutant in Arabidopsis thaliana |
Arabidopsis thaliana |
seedling |
Arrays |
Comparison WS vs DRN |
wt vs mutant comparison |
6 |
| AF31_TAFhaf2 |
Gene expression affected by the mutation of Arabidopsis thaliana HAF2 gene encoding TATA-binding protein (TBP)-associated factor TAF1 |
Arabidopsis thaliana |
rosette |
Arrays |
comparison TAF WS |
wt vs mutant comparison |
6 |
| AF32_Root-Knot_Nematode |
Response to nematode infection |
Arabidopsis thaliana |
roots |
Arrays |
Nematode-1 |
normal vs disease comparison |
12 |
| AF47_Thioredoxins |
Impact of a plastidial redox perturbation on Arabidopsis transcriptome |
Arabidopsis thaliana |
rosette |
Arrays |
Comparison Ws vs DE and DY |
wt vs mutant comparison |
6 |
| AF51_ATM |
A functional study of genes that might play a role in DNA repair/recombination and in the response to oxidative stress (Microarrays expression studies, Microbiological assays, In planta functional studies) |
Arabidopsis thaliana |
roots |
Arrays |
ATM-ROOT |
treated vs untreated comparison |
8 |
| AF51_ATM |
A functional study of genes that might play a role in DNA repair/recombination and in the response to oxidative stress (Microarrays expression studies, Microbiological assays, In planta functional studies) |
Arabidopsis thaliana |
seedling |
Arrays |
SADE-CATMA |
treated vs untreated comparison |
4 |
| AF51_ATM |
A functional study of genes that might play a role in DNA repair/recombination and in the response to oxidative stress (Microarrays expression studies, Microbiological assays, In planta functional studies) |
Arabidopsis thaliana |
whole plant |
Arrays |
ATM time course |
time course |
16 |
| AF73_OST2 |
Open stomata 2 mutant |
Arabidopsis thaliana |
aerial |
Arrays |
OPEN STOMATA2 |
wt vs mutant comparison |
12 |
| AFFY_Aba_Ath1 |
Characterization of aba3-1 suppressor mutants |
Arabidopsis thaliana |
aerial |
Arrays |
AFFY_Aba_Ath1 |
wt vs mutant comparison |
12 |
| AFFY_ATH_2012_04 |
Fonctional caracherization of JMJ24, a putative histone demethylase |
Arabidopsis thaliana |
aerial |
Arrays |
AFFY_ATH_2012_04 |
gene knock out |
8 |
| AFFY_ATH_2012_05 |
Arabidopsis Ubiquitin-Like Proteases characterization |
Arabidopsis thaliana |
seedling |
Arrays |
AFFY_ATH_2012_05 |
gene knock out |
12 |
| AFFY_L2BCTV_Ath |
Expression viral protein L2 BCTV in Arabidopsis thaliana |
Arabidopsis thaliana |
aerial |
Arrays |
AFFY_L2BCTV_Ath |
gene knock in (transgenic) |
9 |
| AFFY_MeJA_Arabidopsis |
Study of the effect of C2 on the transcriptome and the response to MeJA |
Arabidopsis thaliana |
whole plant |
Arrays |
AFFY_MeJA_Arabidopsis |
gene knock in (transgenic),treated vs untreated comparison |
12 |
| AFFY_Phloem_ATh1 |
transcriptome octopus |
Arabidopsis thaliana |
whole plant |
Arrays |
AFFY_Phloem_ATh1 |
gene knock in (transgenic),gene knock out |
6 |
| AFFY_syringae_Malaga_Athaliana |
Role of different proteases in plant defence |
Arabidopsis thaliana |
caulin leaf |
Arrays |
AFFY_syringae_Malaga_Athaliana |
gene knock out,normal vs antisens mutant comparison |
24 |
| AU05-01_P25 |
P25 Transgenic Arabidopsis.
Characterization of genes differentially expressed in roots of transgenic arabidopsis lines expressing the p25 protein of beet necrotic yellow vein virus. |
Arabidopsis thaliana |
roots |
Arrays |
Stages 1.02-1.04 and 1.06 |
normal vs transgenic comparaison |
8 |
| AU05-02_FWA |
Effect of DNA hypomethylation on gene expression |
Arabidopsis thaliana |
rosette |
Arrays |
FWA-leaves |
gene knock out |
7 |
| AU05-02_FWA |
Effect of DNA hypomethylation on gene expression |
Arabidopsis thaliana |
pollen |
Arrays |
FWA-Pollen |
gene knock out |
6 |
| AU05-03_GABA |
Transcriptomic analysis of pop2-1 mutant in Arabidopsis thaliana : a step towards elucidation of the role of GABA in plants. |
Arabidopsis thaliana |
whole plant |
Arrays |
Ler vs pop2-1: GABA over-accumulation effects |
gene knock out,time course |
16 |
| AU05-05_Rhodococcus |
Molecular analysis of symptom development on Arabidopsis Thaliana by the pathogenic bacterium Rhodococcus fascians. |
Arabidopsis thaliana |
stem |
Arrays |
Rhodococcus response |
normal vs disease comparison,time course |
12 |
| AU06-01_ITEGE |
Impact of Transposable Elements on Gene Regulation |
Arabidopsis thaliana |
aerial |
Arrays |
Ecotypes comparison (Col0 and Ler0) |
ecotype comparison |
8 |
| AU06-01_ITEGE |
Impact of Transposable Elements on Gene Regulation |
Arabidopsis thaliana |
aerial |
Arrays |
Impact of SINE RNA |
gene knock in (transgenic) |
6 |
| AU06-01_ITEGE |
Impact of Transposable Elements on Gene Regulation |
Arabidopsis thaliana |
aerial |
Arrays |
Impact of the gcn2 mutation |
gene knock out |
6 |
| AU06-02_Bzo2h |
Functional Characterization of AtbZIP9 |
Arabidopsis thaliana |
whole plant |
Arrays |
ZIP9_target_genes |
gene knock in (transgenic),gene knock out |
9 |
| AU06-03_TSN_FJ |
Tudor-SN knockout |
Arabidopsis thaliana |
roots |
Arrays |
TSN_FJ |
gene knock in (transgenic),gene knock out |
12 |
| AU07-01_PLD-SA |
Role of phospholipase D in salycilc acid signaling in Arabidopsis thaliana suspension cells. |
Arabidopsis thaliana |
cell culture/primary cell |
Arrays |
identification of SA responsive genes dependent on PLD activation |
treated vs untreated comparison |
12 |
| AU07-02_TRV |
Functional Genomic study in virus-infected plants. |
Arabidopsis thaliana |
rosette |
Arrays |
Arabidopsis transcriptome microarray from virus infected leafs. |
normal vs disease comparison |
6 |
| AU07-02_TRV |
Functional Genomic study in virus-infected plants. |
Arabidopsis thaliana |
roots |
Arrays |
Arabidopsis transcriptome microarray from virus infected roots. |
normal vs disease comparison |
6 |
| AU07-02_TRV |
Functional Genomic study in virus-infected plants. |
Arabidopsis thaliana |
aerial |
Arrays |
Arabidopsis transcriptome microarray from virus infected plants. |
normal vs disease comparison |
6 |
| AU07-03_MYB77 |
Functional characterization of AtMYB77 transcription factor. |
Arabidopsis thaliana |
seedling |
Arrays |
WT/MYB77 |
gene knock in (transgenic),gene knock out |
6 |
| AU07-04_VIP1 |
Identification of the VIP1 targets |
Arabidopsis thaliana |
whole plant |
Arrays |
per8::VIP micro-array |
treated vs untreated comparison |
12 |
| AU07-05_Groundworms |
Effect of earthworms on Arabidopsis transcriptome. |
Arabidopsis thaliana |
aerial |
Arrays |
Groundworms |
treated vs untreated comparison |
8 |
| AU07-06_GDH |
Transcriptomique analysis of GDH |
Arabidopsis thaliana |
roots |
Arrays |
Trancript profiling in Arabidopsis GDH mutant. |
wt vs mutant comparison |
21 |
| AU07-07_Salmonella |
Interactions between plants and human pathogenic bacteria. |
Arabidopsis thaliana |
whole plant |
Arrays |
Infection with Salmonella or Pseudomonas or E. coli. |
treated vs untreated comparison |
8 |
| AU07-08_SQE |
Plant Small RNAs. |
Arabidopsis thaliana |
whole plant |
Arrays |
NaCl |
treated vs untreated comparison |
6 |
| AU07-09_Alternaria |
Changes in gene expression in MKK2 and MKKKC5 mutants |
Arabidopsis thaliana |
rosette |
Arrays |
MKK2EE and mkkkc5 mutants |
wt vs mutant comparison |
6 |
| AU07-09_Alternaria |
Changes in gene expression in MKK2 and MKKKC5 mutants |
Arabidopsis thaliana |
rosette |
Arrays |
Alternaria |
treatment variations |
18 |
| AU07-10_mpk |
Transcriptomic analysis of MAPK KOs mutants under normal growing conditions. |
Arabidopsis thaliana |
seedling |
Arrays |
BB |
gene knock out |
2 |
| AU07-10_mpk |
Transcriptomic analysis of MAPK KOs mutants under normal growing conditions. |
Arabidopsis thaliana |
seedling |
Arrays |
mpk |
gene knock out |
14 |
| AU07-11_haiku |
Study of small seed mutants. |
Arabidopsis thaliana |
seed |
Arrays |
Compare haiku mutants with wildtype |
gene knock out |
14 |
| AU07-12_GeminiSelSup |
Biodiversity and functional genomics of endogenous small RNAs induced upon biotic and abiotic stresses in plants. |
Arabidopsis thaliana |
whole plant |
Arrays |
GEMSUP |
gene knock in (transgenic) |
12 |
| AU07-13_SQE1 |
Functional analysis and biotechnological application of genes involved in drought and salt stress tolerance in plants. |
Arabidopsis thaliana |
rosette |
Arrays |
SQE1 |
gene knock out |
6 |
| AU08-01_Cytb561 |
Ascorbate metabolism in plants: physiological function and biochemical properties of cytochromes b561 |
Arabidopsis thaliana |
rosette |
Arrays |
cytb1-1 |
gene knock out |
8 |
| AU08-02_mkk1-mkk2 |
Transcriptome of mkk1-mkk2 mutants. |
Arabidopsis thaliana |
seedling |
Arrays |
mkk1-mkk2 |
gene knock out |
6 |
| AU08-04_DFO |
Analysis of Arabidopsis transcriptome in response to deferoxamine. |
Arabidopsis thaliana |
roots |
Arrays |
Analysis of deferoxamine treated leaves and roots |
time course,treated vs untreated comparison |
16 |
| AU08-05_p25Ind |
Global transcriptome deregulation of P25 expressing Arabidospis thaliana. |
Arabidopsis thaliana |
roots |
Arrays |
Comparison between constitutive and inducible p25 plants |
gene knock in (transgenic) |
20 |
| AU08-06_mpk6_heat_stressed |
Transcriptomic analysis of mpk6 KO mutant after heat stress treatment |
Arabidopsis thaliana |
seedling |
Arrays |
AU08-06_mpk6_heat_stressed |
treated vs untreated comparison |
8 |
| AU-09-01_mpk_flagellin_edu |
Flagellin response in mpk mutants. |
Arabidopsis thaliana |
seedling |
Arrays |
Col-0 flg22 |
treated vs untreated comparison |
4 |
| AU-09-01_mpk_flagellin_edu |
Flagellin response in mpk mutants. |
Arabidopsis thaliana |
seedling |
Arrays |
Bak1Bkk1 |
gene knock out |
4 |
| AU-09-01_mpk_flagellin_edu |
Flagellin response in mpk mutants. |
Arabidopsis thaliana |
seedling |
Arrays |
mpk6 |
gene knock out |
4 |
| AU-09-01_mpk_flagellin_edu |
Flagellin response in mpk mutants. |
Arabidopsis thaliana |
seedling |
Arrays |
mpk4 flg22 |
treated vs untreated comparison |
4 |
| AU-09-01_mpk_flagellin_edu |
Flagellin response in mpk mutants. |
Arabidopsis thaliana |
seedling |
Arrays |
mpk3 |
wt vs mutant comparison |
4 |
| AU-09-01_mpk_flagellin_edu |
Flagellin response in mpk mutants. |
Arabidopsis thaliana |
seedling |
Arrays |
mpk6 flg22 |
treated vs untreated comparison |
4 |
| AU-09-01_mpk_flagellin_edu |
Flagellin response in mpk mutants. |
Arabidopsis thaliana |
seedling |
Arrays |
Bak1 bkk1 flg22 |
treated vs untreated comparison |
4 |
| AU-09-01_mpk_flagellin_edu |
Flagellin response in mpk mutants. |
Arabidopsis thaliana |
seedling |
Arrays |
mpk3 flg22 |
treated vs untreated comparison |
4 |
| AU09-02_WOX14 |
Gene expression affected by the AtWOX14 gene mutation. |
Arabidopsis thaliana |
seedling |
Arrays |
WOX13 orthologous group |
gene knock out |
8 |
| AU09-03_gamma-irradiation |
Transcriptomic analysis of effetcs of ionising radiation on Arabidopsis thaliana. |
Arabidopsis thaliana |
whole plant |
Arrays |
2 doses of ionising radiations (X-rays) |
dose response,time course |
12 |
| AU09-04_GeminiSilSup2 |
PLASMAR. Biodiversity and functional genomics of endogenous small RNAs induced upon biotic and abiotic stresses in plants. |
Arabidopsis thaliana |
whole plant |
Arrays |
GEMSUPV2 |
gene knock in (transgenic) |
6 |
| AU10-01_overexpressionoxi1 |
Transcriptomic analysis of the overexpression of Oxi1 |
Arabidopsis thaliana |
rosette |
Arrays |
AU10-01_overexpressionoxi1 |
normal vs transgenic comparaison |
4 |
| AU10-03_hub1 |
Kinetics of gene expression after light exposure in hub1-3 mutant compared to wild-type |
Arabidopsis thaliana |
seedling |
Arrays |
Kinetics of gene expression after light exposure in hub1-3 mutant compared to wild-type |
genotype comparaison,time course |
12 |
| AU10-04_phytoremediation |
phytoremediation |
Arabidopsis thaliana |
whole plant |
Arrays |
Impact of sucrose on the tolerance of phenanthrene |
treated vs untreated comparison |
33 |
| AU10-06_Salmonella |
Trancriptomic analysis in Salmonella typhimurium infection |
Arabidopsis thaliana |
seedling |
Arrays |
Salmonella_prgH |
normal vs disease comparison |
4 |
| AU10-06_Salmonella |
Trancriptomic analysis in Salmonella typhimurium infection |
Arabidopsis thaliana |
seedling |
Arrays |
Salmonella_14028S |
normal vs disease comparison |
4 |
| AU10-06_Salmonella |
Trancriptomic analysis in Salmonella typhimurium infection |
Arabidopsis thaliana |
seedling |
Arrays |
invA_vs_14028S |
normal vs disease comparison |
4 |
| AU10-06_Salmonella |
Trancriptomic analysis in Salmonella typhimurium infection |
Arabidopsis thaliana |
seedling |
Arrays |
Salmonell invA |
normal vs antisens mutant comparison |
4 |
| AU10-07_MPK4gof |
Transcriptome study of mpk4 complemented line with a hyperactive form of MPK4 (MPK4 GOF). |
Arabidopsis thaliana |
whole plant |
Arrays |
mpk4/MPK4 GOF vs mpk4/MPK4 vs Col0 |
genotype comparaison |
8 |
| AU10-09_GemSupV2TS-7 |
Biodiversity and functional genomics of endogenous small RNAs induced upon biotic and abiotic stresses in plants. |
Arabidopsis thaliana |
whole plant |
Arrays |
GEMSUPV2TS-7 |
gene knock in (transgenic) |
6 |
| AU10-10_Cold |
PI4kinases and Long-chain bases kinases in response to cold stress |
Arabidopsis thaliana |
whole plant |
Arrays |
defenses mechanism in response to cold stress |
treated vs untreated comparison |
16 |
| AU10-11_DspA |
Gene expression in response to the expression of the bacterial type 3 effector DspA/E |
Arabidopsis thaliana |
seedling |
Arrays |
Induction of DspA/E expression in a transgenic A. thaliana line |
gene knock out,genotype comparaison,treated vs untreated comparison |
8 |
| AU10-12_PA |
Phosphatidic acid in gene expression |
Arabidopsis thaliana |
cell culture/primary cell |
Arrays |
Phosphatidic acid in gene expression |
treated vs untreated comparison |
30 |
| AU10-13_CellWall |
Differentially expressed genes in stems of Arabidopsis deficient in monolignol export
and in stems of Arabidopsis plants expressing a hydroxycinnamoyl-CoA hydratase/lyase |
Arabidopsis thaliana |
stem |
Arrays |
cell wall mutants |
gene knock in (transgenic),normal vs transgenic comparaison |
9 |
| AU10-14_Fer |
Role of ethylene in Fe deficieny response signalling |
Arabidopsis thaliana |
whole plant |
Arrays |
Response of ein3eil1 mutants to Fe deficiency |
gene knock out,treated vs untreated comparison |
12 |
| AU10-15_cineroots |
transdifferenciation from root to shoot apical meristem |
Arabidopsis thaliana |
roots |
Arrays |
transdifferenciation |
time course |
8 |
| AU11-01_WOX14bis |
Floral stem gene expression affected by the AtWOX14 gene mutation |
Arabidopsis thaliana |
stem |
Arrays |
Transcriptome analyses of N8514 and wox14 |
gene knock out,normal vs transgenic comparaison |
4 |
| AU11-02_CHO-THF |
Transcriptomic and metabolic changes in Arabidopsis thaliana supplemented with 5-CHO-THF and its relationship with the accumulation and transformation to THF active derivatives |
Arabidopsis thaliana |
caulin leaf |
Arrays |
shoots and roots treated with Methotrexate and 5-Formyl-THF |
treated vs untreated comparison |
18 |
| AU11-03_Gravite |
Action of microgravity on root development |
Arabidopsis thaliana |
roots |
Arrays |
Action of microgravity on root development |
treated vs untreated comparison |
12 |
| AU12-06_CPSF30 |
Cell death control by CPSF30. |
Arabidopsis thaliana |
rosette |
Arrays |
cpsf30 mips1 transcriptome |
genotype comparaison |
8 |
| AU13-01_PI-PLC |
Inhibition of the PI-PLC by U73122 |
Arabidopsis thaliana |
cell culture/primary cell |
Arrays |
Inhibition des PI-PLC par le U73122 |
treated vs untreated comparison,treatment variations |
6 |
| AU13-03_CUC2 |
Morphodynamics in Plants: from gene to shape. |
Arabidopsis thaliana |
flower bud |
Arrays |
Identification of target genes regulated by CUC2 in A.thaliana shoot apical meristem. |
genotype comparaison |
6 |
| AU13-04_crl |
Transcriptome comparison of the crl mutant and CDT1-RNAi line |
Arabidopsis thaliana |
seedling |
Arrays |
CDT1_bis |
normal vs rnai mutant comparaison,normal vs transgenic comparaison |
8 |
| AU13-06_FIT |
Differential gene expression in A. thaliana roots depending on iron supply and FIT (FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR) abundance |
Arabidopsis thaliana |
roots |
Arrays |
Fe-FIT-Diff |
normal vs transgenic comparaison,treated vs untreated comparison |
18 |
| AU13-07_Ox |
bHLH039 overexpression results in iron accumulation dependent on the FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (FIT) |
Arabidopsis thaliana |
seedling |
Arrays |
Comparison 39Ox and WT samples with or without Fe |
normal vs transgenic comparaison,treated vs untreated comparison |
12 |
| AU13-08_AtpPLAII-alpha |
None |
Arabidopsis thaliana |
rosette |
Arrays |
Transcriptional profilling of Arabidopsis plants. |
genotype comparaison,treated vs untreated comparison |
12 |
| AU13-11_Gravity |
Gravitational signature of synchronized cell cultures in particular cell cycle stages |
Arabidopsis thaliana |
cell culture/primary cell |
Arrays |
Gravity |
time course,treated vs untreated comparison |
12 |
| AU13-12_Polysome |
transcriptomic and translatomic analysis of Arabidopsis seeds |
Arabidopsis thaliana |
seed |
Arrays |
Transcriptome and translatome of Arabidopsis WT seeds according to dormancy |
time course |
24 |
| AU13-14_MYB1 |
MYB1s partners |
Arabidopsis thaliana |
stem |
Arrays |
transcript modification by MYB1 interactants |
normal vs transgenic comparaison |
12 |
| AU13-15_sup62 |
Transcriptome sup62 and cpsf30 mpk4 |
Arabidopsis thaliana |
aerial,rosette |
Arrays |
4 mutants |
gene knock out,genotype comparaison |
10 |
| AU14-01_Tn |
Projet TN 2014 : effet sur Arabidopsis thaliana. |
Arabidopsis thaliana |
caulin leaf |
Arrays |
Observation des effets du produit Tn sur lexpression des gènes dA.thaliana. |
dose response |
10 |
| AU14-03_BIGUN |
Functional characterization of BIGUN proteins in Arabidopsis thaliana. |
Arabidopsis thaliana |
rosette |
Arrays |
bigun transcriptomics |
gene knock out,normal vs disease comparison |
18 |
| AU14-04_INASEED |
INASEEDarray |
Arabidopsis thaliana |
seed,seedling |
Arrays |
INASEEDarray |
gene knock out |
18 |
| AU14-05_pi4kbeta1beta2 |
pi4kbeta1beta2 sid2 triple mutant |
Arabidopsis thaliana |
rosette |
Arrays |
pi4kbeta1beta2 sid2 triple mutant |
genotype comparaison |
8 |
| AU14-08_xrn_vcs |
Seed transcriptome of xrn4-5 and vcs-8 mutants. |
Arabidopsis thaliana |
seed |
Arrays |
Seed transcriptome of xrn4-5 and vcs-8 mutants. |
gene knock out |
9 |
| AU14-09_Silice |
Impact on Arabidopsis thaliana transcriptome of multifunctional silica nanoparticles based on metal atom clusters. |
Arabidopsis thaliana |
cell culture/primary cell |
Arrays |
CLUSTOP transcriptomics. |
treated vs untreated comparison |
10 |
| AU14-10_WD40 |
Effet of light on translatome of Arabidopsis seeds during germination |
Arabidopsis thaliana |
seed |
Arrays |
Effet of light on translatome of Arabidopsis seeds during germination |
treated vs untreated comparison |
12 |
| AU14-11_Levure |
Study the genes expression by a residue of culture |
Arabidopsis thaliana |
cell culture/primary cell |
Arrays |
Study of a kinetic answer |
time course,treated vs untreated comparison |
8 |
| AU15-01_IRON-FIT |
Differential gene expression in A. thaliana roots depending on iron supply and FIT (FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR) abundance. |
Arabidopsis thaliana |
seedling |
Arrays |
Fe-FIT-Diff_6d |
gene knock in (transgenic),gene knock out,treated vs untreated comparison |
18 |
| AU15-02_TRX |
Redox regulation in plants. |
Arabidopsis thaliana |
aerial |
Arrays |
Effect of FTR mutation on Arabidopsis trancriptome |
gene knock out |
12 |
| AU15-04_Xeno |
Molecular analysis of signal transduction mechanisms involved in plant organic pollutant interactions. |
Arabidopsis thaliana |
rosette |
Arrays |
Transcriptomic analysis of the effects of low levels of atrazine and by-products |
treated vs untreated comparison |
8 |
| AU15-05_FIT |
Differential gene expression in A. thaliana seedlings depending on the introduction of a point mutation in FIT (FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR) under iron deficient conditions. |
Arabidopsis thaliana |
seedling |
Arrays |
Differential gene expression in A.Tha. depending on mutation in FIT |
gene knock out,genotype comparaison,normal vs transgenic comparaison |
12 |
| AU17-01_Dgk5.1_bis |
Transcriptome analysis of dgk5 mutant (with 3 biological replicats). |
Arabidopsis thaliana |
seedling |
Arrays |
Transcriptome analysis of dgk5 mutant in response to flagellin |
treated vs untreated comparison |
12 |
| BLAN08_RNApaths |
Integrating RNA Quality Control and RNA Silencing Pathways |
Arabidopsis thaliana |
aerial |
Arrays |
Analyses of endogenous RNA substrates of XRN and exosome and PTGS pathways. |
gene knock in (transgenic),gene knock out |
34 |
| Blanc-08-01_2012_01_RNAPATHs_03 |
RNAPATHS-3 |
Arabidopsis thaliana |
seedling |
Arrays |
RNAPATHS--3_02/2012 |
genotype comparaison |
16 |
| Blanc-08-01_2012_01_RNAPATHs_nsr |
study the role of AtNSRs proteins in the regulation of gene expression |
Arabidopsis thaliana |
whole plant |
Arrays |
AtNSRs |
gene knock out |
12 |
| BRA-INRA09-01_BIOEN |
Energetic Homeostasis and Sugar Signaling |
Arabidopsis thaliana |
whole plant |
Arrays |
BZIP9 |
genotype comparaison |
24 |
| BRA-INRA09-01_BIOEN |
Energetic Homeostasis and Sugar Signaling |
Arabidopsis thaliana |
whole plant |
Arrays |
Cordycepin |
treatment variations |
15 |
| BRA-INRA09-01_BIOEN |
Energetic Homeostasis and Sugar Signaling |
Arabidopsis thaliana |
whole plant |
Arrays |
abi4 |
wt vs mutant comparison |
15 |
| BRA-INRA09-02_BIOEN_Nitrogen |
Nitrate induction - nlp mutants |
Arabidopsis thaliana |
whole plant |
Arrays |
Nitrate induction - nlp mutants |
gene knock out,time course |
26 |
| CAT-seq |
Comparative Arabidopsis Transcriptome -Sequencing |
Arabidopsis thaliana |
aerial |
RNA-Seq |
RNA-Seq part |
organ comparison |
4 |
| CAT-seq |
Comparative Arabidopsis Transcriptome -Sequencing |
Arabidopsis thaliana |
aerial |
Arrays |
BF_vs_F |
organ comparison |
4 |
| CAT-seq |
Comparative Arabidopsis Transcriptome -Sequencing |
Arabidopsis thaliana |
aerial |
Arrays |
CRR4_DYW1_Col0 |
genotype comparaison |
6 |
| CEA03-01_Cadmium |
Dynamic of the Arabidopsis thaliana transcriptome following a cadmium exposition |
Arabidopsis thaliana |
roots |
Arrays |
Cadmium effect on roots and leaves |
dose response,time course |
54 |
| CEA03-02_Translatome-Cd |
Analysis of the translatome of Arabidopsis in response to Cadmium stress |
Arabidopsis thaliana |
cell culture/primary cell |
Arrays |
Translatome-Cd |
transcribed vs translated,treated vs untreated comparison |
12 |
| CEA05-01_carbonic-anhydrase |
Comparative transcriptome analysis between carbonic anhydrase mutants and wild type Arabidopsis |
Arabidopsis thaliana |
rosette |
Arrays |
carbonic anhydrase (1 or 2) simple or double mutants |
gene knock out |
8 |
| CEA06-01_Uranyl_nitrate |
Transcriptomic analysis of uranyl response in Arabidopsis thaliana |
Arabidopsis thaliana |
rosette |
Arrays |
Time course Uranyl nitrate response |
organ comparison,time course,treated vs untreated comparison |
36 |
| CEA06-02_folate |
dynamics of Arabidopsis transcriptome during folate depletion |
Arabidopsis thaliana |
cell culture/primary cell |
Arrays |
methotrexate treatment |
time course,treated vs untreated comparison |
14 |
| CEA10-01_Phosphate |
Transcripomics on the Arabidopsis Root tip during phosphate starvation |
Arabidopsis thaliana |
roots |
Arrays |
Transcripomics on the Arabidopsis Root tip during phosphate starvation |
time course,treated vs untreated comparison |
12 |
| CEA10-02_Light |
Photooxidative stress and light acclimation in the PSII antenna-deficient ch1 mutant |
Arabidopsis thaliana |
aerial |
Arrays |
Photooxidative stress |
genotype comparaison,treated vs untreated comparison |
24 |
| CEA10-03_Cyclocitral |
Characterization of β-cyclocitral effects in Arabidopsis thaliana. |
Arabidopsis thaliana |
aerial |
Arrays |
Analysis of Arabidopsis transcriptome in response to b-cyclocitral treatment |
treated vs untreated comparison |
6 |
| CEA11-02_Phosphatin |
Phosphatin effect on Arabidopsis |
Arabidopsis thaliana |
roots |
Arrays |
Transcriptomic analysis of Phosphatin effect |
treated vs untreated comparison |
9 |
| CEA12-02_ChloroSap |
Chloro-Sap |
Arabidopsis thaliana |
aerial |
Arrays |
Comparison after 4 and 52h |
normal vs transgenic comparaison,time course |
18 |
| CEA13-01_oxi1 |
Transcriptomic analysis on the effect of oxi1 mutation under high light. |
Arabidopsis thaliana |
rosette |
Arrays |
oxi1 Transcriptome |
genotype comparaison |
8 |
| FAPESP-BRA-INRA-10-01_BIOEN_hypocotyl |
Dark hypocotyls TOR RNAi |
Arabidopsis thaliana |
hypocotyl |
Arrays |
Dark hypocotyls TOR RNAi |
normal vs rnai mutant comparaison |
6 |
| GEN26_DroughtStress |
Transcriptional and translational status of genes responding to drought stress |
Arabidopsis thaliana |
aerial |
Arrays |
Drought |
treated vs untreated comparison |
12 |
| GEN45-Carpel_development |
Modelling the Transcriptional Network in Arabidopsis Fruit Development. |
Arabidopsis thaliana |
aerial |
Arrays |
Overexpressors |
treated vs untreated comparison |
32 |
| GEN45-Carpel_development |
Modelling the Transcriptional Network in Arabidopsis Fruit Development. |
Arabidopsis thaliana |
flower |
Arrays |
crc1 mutant |
gene knock out |
2 |
| GnP06-01b_AgriArray |
New developments towards a genetic and diagnosis use of plant microarrays |
Arabidopsis thaliana |
roots |
Arrays |
Multiplexage : dual-target hybridization microarray experiment |
genotype and ecotype comparison |
48 |
| GnP06-01b_AgriArray |
New developments towards a genetic and diagnosis use of plant microarrays |
Arabidopsis thaliana |
caulin leaf |
Arrays |
Nitrogen starvation |
time course,tissue comparison |
6 |
| GnP06-02_Starch |
Initiation synthesis and degradation : an integrated approach toward the understanding of starch metabolism and formation in plants. |
Arabidopsis thaliana |
rosette |
Arrays |
ISD-Starch |
gene knock out |
60 |
| GnP06-03_MicroTrAc |
Gene profiling of Turnip Crinkle Virus (TCV) siRNA in mutants at generation G1 and G10. |
Arabidopsis thaliana |
flower |
Arrays |
Endogenous Hairpins-IR71 targets |
gene knock out |
6 |
| GnP06-03_MicroTrAc |
Gene profiling of Turnip Crinkle Virus (TCV) siRNA in mutants at generation G1 and G10. |
Arabidopsis thaliana |
rosette |
Arrays |
Gene profiling of Turnip Crinkle Virus (TCV) siRNA in mutants at generation G1 and G11 |
gene knock out,treated vs untreated comparison |
20 |
| GnP06-03_MicroTrAc |
Gene profiling of Turnip Crinkle Virus (TCV) siRNA in mutants at generation G1 and G10. |
Arabidopsis thaliana |
rosette |
Arrays |
Gene profiling of viral siRNA in mutants at generation G1. |
gene knock out,treated vs untreated comparison |
8 |
| Gnp07_Regeneome_cuc2 |
Gnp07_Regeneome_cuc2 |
Arabidopsis thaliana |
aerial |
Arrays |
CUC2 |
tissue comparison,wt vs mutant comparison |
16 |
| Gnp07_Regeneome_embryogenesis |
somatic embryogenesis |
Arabidopsis thaliana |
callus |
Arrays |
embryogenesis col0 |
tissue comparison |
8 |
| Gnp07_Regeneome_embryogenesis |
somatic embryogenesis |
Arabidopsis thaliana |
callus |
Arrays |
embryogenesis ws |
tissue comparison |
6 |
| Gnp07_Regeneome_microdissectionbias |
Transcriptome bias induce by protocols used in microdissection |
Arabidopsis thaliana |
flower |
Arrays |
microdissection vs no microdissection |
treated vs untreated comparison |
4 |
| Gnp07_Regeneome_transdifferentiation |
transdifferentiation of Root Apical Meristem to Shoot Apical Meristem |
Arabidopsis thaliana |
roots |
Arrays |
microdissection |
time course |
8 |
| GNP07_RILKIT |
Tools to optimize the use of RIL populations, for natural diversity studies and QTL cloning |
Arabidopsis thaliana |
aerial |
Arrays |
RILKIT-eQTL analysis (random pair design) |
genotype and ecotype comparison |
327 |
| GNP3_TRI33-Arabidoseed |
Establishing the network of seed gene expression and analysis of its biodiversity |
Arabidopsis thaliana |
seed |
Arrays |
Preliminary experiment:repetability |
genotype and ecotype comparison |
8 |
| GNP3_TRI33-Arabidoseed |
Establishing the network of seed gene expression and analysis of its biodiversity |
Arabidopsis thaliana |
seed |
Arrays |
Seed specific genes |
organ comparison |
3 |
| GNP3_TRI33-Arabidoseed |
Establishing the network of seed gene expression and analysis of its biodiversity |
Arabidopsis thaliana |
silique and seed |
Arrays |
Seed development |
time course |
4 |
| GNP3_TRI33-Arabidoseed |
Establishing the network of seed gene expression and analysis of its biodiversity |
Arabidopsis thaliana |
seed |
Arrays |
Embryo seed development |
time course |
15 |
| GNP3_TRI33-Arabidoseed |
Establishing the network of seed gene expression and analysis of its biodiversity |
Arabidopsis thaliana |
silique and seed |
Arrays |
eQTL analysis (random pair design) |
genotype and ecotype comparison |
160 |
| GnP_Blan06_TORPTEN |
The signalisation way TOR/PTEN in Arabidospsis. |
Arabidopsis thaliana |
seedling |
Arrays |
RNAi Tor time course |
normal vs rnai mutant comparaison |
24 |
| GnP_Blan06_TORPTEN |
The signalisation way TOR/PTEN in Arabidospsis. |
Arabidopsis thaliana |
aerial |
Arrays |
LST8 |
gene knock out |
8 |
| GnP_Blan06_TORPTEN |
The signalisation way TOR/PTEN in Arabidospsis. |
Arabidopsis thaliana |
flower |
Arrays |
Overexpression of pten2a |
gene knock in (transgenic) |
6 |
| NGS2012_02_MicroD |
Dilution |
Arabidopsis thaliana |
seed |
RNA-Seq |
NGS micro D-2 |
null |
6 |
| NGS2014_01_MicroD |
None |
Arabidopsis thaliana |
seed |
RNA-Seq |
NGS micro D-1 |
organ comparison |
8 |
| NGS2014_10_Epsilon |
Transcriptomic changes associated with DNA pol epsilon deficiency |
Arabidopsis thaliana |
seedling |
RNA-Seq |
Transcriptome deficient mutants for the epsilon DNA polymerase |
normal vs transgenic comparaison |
12 |
| NGS2014_39_LeafNet2 |
Dynamic and specificity of CUP-SHAPED COTYLEDON transcription factors during leaf development |
Arabidopsis thaliana |
seedling |
RNA-Seq |
CUC2-identification |
treated vs untreated comparison |
6 |
| NGS2015_01_Transition |
Transcriptome of floral transition |
Arabidopsis thaliana |
rosette |
RNA-Seq |
Transition |
time course |
12 |
| NGS2015_05_HIGH_TEMPERATURE_ROOT |
High temperature Arabidopsis root transcriptome |
Arabidopsis thaliana |
roots |
RNA-Seq |
High Temp WT |
treated vs untreated comparison |
7 |
| NGS2016-07-ASCOncRNA |
Splicing regulation by the lncRNA ASCO |
Arabidopsis thaliana |
seedling |
RNA-Seq |
Splicing regulation by the lncRNA ASCO |
normal vs rnai mutant comparaison,normal vs transgenic comparaison |
9 |
| NGS2016_08_DYW2 |
DYW2_OTP100 |
Arabidopsis thaliana |
flower bud,rosette,stem |
RNA-Seq |
DYW2 |
gene knock out |
12 |
| NGS2016_10_Dormancy |
Dormancy Release by phosphorylation |
Arabidopsis thaliana |
seed |
RNA-Seq |
RNA seq on mpk8 and tcp14 mutants on dry and imbibited seeds |
gene knock out |
18 |
| NGS2018_05_TOR |
Analysis of Arabidopsis mutants TOR/LST8/MAKTOR |
Arabidopsis thaliana |
whole plant |
RNA-Seq |
Analysis of Arabidopsis mutants TOR/LST8/YAK1/MAKTOR |
gene knock out |
18 |
| NGS2018_10_Ethylene |
RNA-seq ± Ethylene |
Arabidopsis thaliana |
seed |
RNA-Seq |
effect of ethylene RNA-seq |
treated vs untreated comparison |
21 |
| NGS2018_11_nlp2 |
Study of the primary nitrate response (PNR) in nlp2 mutant and WT |
Arabidopsis thaliana |
seedling |
RNA-Seq |
No treatment / Nitrate starvation / Nitrate induction |
normal vs mutant comparison,treated vs untreated comparison |
18 |
| NGS2019_18_Eplus |
Eplus |
Arabidopsis thaliana |
leaf |
RNA-Seq |
Eplus |
gene knock out |
12 |
| NGS2020_14_pi4kb1b2 |
Study of pi4kb1b2 mutant |
Arabidopsis thaliana |
leaf |
RNA-Seq |
Differential gene expression in seedlings of pi4kb1b2 |
gene knock out,organ comparison |
12 |
| NGS2020_20_IDEAS |
IDEAS project on nitrogen starvation |
Arabidopsis thaliana |
rosette |
RNA-Seq |
IDEAS |
treated vs untreated comparison |
20 |
| NGS2020_24_ERA |
Protein farnesylation is involved in the adaptation of Arabidopsis to nitrogen starvation |
Arabidopsis thaliana |
rosette |
RNA-Seq |
Nitrogen |
dose response,genotype and ecotype comparison |
18 |
| NGS2021_03_Snap33 |
Description of Arabidopsis thaliana t-SNARE SNAP33 |
Arabidopsis thaliana |
seedling,whole plant |
RNA-Seq |
RNA-seq snap33-1 vs WT |
gene knock out,genotype comparison,time course |
12 |
| NGS2021_04_MAC |
Transcriptome analysis of mutants in uncharacterised mitochondrial proteins |
Arabidopsis thaliana |
seedling |
RNA-Seq |
mTRAN |
gene knock out |
6 |
| NO27_Iron_signaling |
Transcriptomic response to iron signaling |
Arabidopsis thaliana |
cell culture/primary cell |
Arrays |
Iron response |
time course |
7 |
| PC_ARCOLE |
Nitrogenous nutrition efficiency of canola in spring : identification of targets for plant breeding |
Arabidopsis thaliana |
aerial |
Arrays |
ARCOLE / PGPR |
dose response,organ comparison,treated vs untreated comparison |
12 |
| PC_GeBPGPL_transcriptomic-analysis |
GeBP/GPL quadruple mutant and GPL2:VP16 transcriptomic |
Arabidopsis thaliana |
whole plant |
Arrays |
Growth on MS of quadruple and GPL2:VP16 |
gene knock in (transgenic),gene knock out |
12 |
| RA03-02_Potyvirus |
Transcriptional analysis of Arabidopsis thaliana infected by a potyvirus. |
Arabidopsis thaliana |
rosette |
Arrays |
Potyvirus |
normal vs disease comparison |
4 |
| RA03-03_Protoplast |
From protoplast to plant : transcriptome profiling from cell division to differentiation in Arabidopsis thaliana |
Arabidopsis thaliana |
aerial |
Arrays |
transcriptome profiling from a protoplast culture of arabidopsis thaliana |
time course |
15 |
| RA03-04_Elongation_isoxaben |
Transcriptome analysis of the hypocotyl growth switch |
Arabidopsis thaliana |
hypocotyl |
Arrays |
Isoxaben treatment |
treated vs untreated comparison |
4 |
| RA03-04_Elongation_isoxaben |
Transcriptome analysis of the hypocotyl growth switch |
Arabidopsis thaliana |
hypocotyl |
Arrays |
Time course |
time course |
4 |
| RA03-04_Elongation_isoxaben |
Transcriptome analysis of the hypocotyl growth switch |
Arabidopsis thaliana |
whole plant |
Arrays |
plant germination |
time course |
3 |
| RA03-05_Clubroot |
Deciphering the Arabidopsis mechanisms of resistance to clubroot (Plasmodiophora brassicae) by differential analysis of transcriptome. |
Arabidopsis thaliana |
whole plant |
Arrays |
Club root response |
normal vs disease comparison,time course |
12 |
| RA03-05_Clubroot |
Deciphering the Arabidopsis mechanisms of resistance to clubroot (Plasmodiophora brassicae) by differential analysis of transcriptome. |
Arabidopsis thaliana |
roots |
Arrays |
Clubroot CATMA-2 |
organ comparison |
8 |
| RA03-06_Seed_endothelium |
Transcriptome analysis of the tannin-producing cells in Arabidopsis |
Arabidopsis thaliana |
seed |
Arrays |
Endothelium |
gene knock out |
17 |
| RA03-07_TOR |
Transcriptome analysis of TOR (Target of Rapamycin) mutant. |
Arabidopsis thaliana |
roots |
Arrays |
TOR |
treated vs untreated comparison,wt vs mutant comparison |
29 |
| RA03-07_TOR |
Transcriptome analysis of TOR (Target of Rapamycin) mutant. |
Arabidopsis thaliana |
roots |
Arrays |
TOR_RNAi |
wt vs mutant comparison |
8 |
| RA04-01_msil |
Identification of genes induced by fertilization |
Arabidopsis thaliana |
silique and seed |
Arrays |
msil |
wt vs mutant comparison |
4 |
| RA04-02_AGO |
Transcriptome of the argonaute (ago) mutant |
Arabidopsis thaliana |
hypocotyl |
Arrays |
AGO |
gene knock out |
16 |
| RA04-03_Nin7 |
atnin7-1 (atnlp7) in two different nitrogen conditions. |
Arabidopsis thaliana |
roots |
Arrays |
Nin7 |
gene knock out |
14 |
| RA04-04_NRT2.4 |
NRT2.4 NO3 transport mutant. |
Arabidopsis thaliana |
roots |
Arrays |
NRT2.4 |
gene knock out |
4 |
| RA04-05_NO3-seed-dormancy |
Nitrate control of Arabidopsis seed dormancy |
Arabidopsis thaliana |
seed |
Arrays |
siliques |
treated vs untreated comparison |
3 |
| RA04-05_NO3-seed-dormancy |
Nitrate control of Arabidopsis seed dormancy |
Arabidopsis thaliana |
seed |
Arrays |
dry seeds |
treated vs untreated comparison |
6 |
| RA04-05_NO3-seed-dormancy |
Nitrate control of Arabidopsis seed dormancy |
Arabidopsis thaliana |
seed |
Arrays |
soaked seeds |
treated vs untreated comparison |
9 |
| RA04-06_PII |
Study of PII mutant, a sensor of carbon and/or nitrogen status protein |
Arabidopsis thaliana |
aerial |
Arrays |
0-nitrogen |
wt vs mutant comparison |
4 |
| RA04-06_PII |
Study of PII mutant, a sensor of carbon and/or nitrogen status protein |
Arabidopsis thaliana |
aerial |
Arrays |
1mM NO3 |
wt vs mutant comparison |
4 |
| RA04-06_PII |
Study of PII mutant, a sensor of carbon and/or nitrogen status protein |
Arabidopsis thaliana |
aerial |
Arrays |
NH4 |
wt vs mutant comparison |
8 |
| RA04-07_PGPR |
Arabidopsis thaliana transcriptome analysis in response to plant growth promoting rhizobacteria (PGPR). |
Arabidopsis thaliana |
rosette |
Arrays |
Trancriptional response to 3 rhizobacteria |
treated vs untreated comparison |
4 |
| RA04-07_PGPR |
Arabidopsis thaliana transcriptome analysis in response to plant growth promoting rhizobacteria (PGPR). |
Arabidopsis thaliana |
rosette |
Arrays |
Profiling of the PGPR induced systemic resistance (ISR) |
normal vs rnai mutant comparaison,treated vs untreated comparison |
4 |
| RA04-07_PGPR |
Arabidopsis thaliana transcriptome analysis in response to plant growth promoting rhizobacteria (PGPR). |
Arabidopsis thaliana |
roots |
Arrays |
Profiling of the root architecture response to Phyllobacterium |
treated vs untreated comparison |
4 |
| RA04-08_Senescence |
Transcriptomic analysis of leaf senescence in Arabidopsis thaliana. |
Arabidopsis thaliana |
rosette |
Arrays |
Isogenic lines |
near isogenic lines (hif) |
2 |
| RA04-08_Senescence |
Transcriptomic analysis of leaf senescence in Arabidopsis thaliana. |
Arabidopsis thaliana |
rosette |
Arrays |
Sugars and leaf senescence |
treated vs untreated comparison |
12 |
| RA05-01_Ethylene |
Study of the ethylene respons in plants.Cellular elongation in the root and ethylene. |
Arabidopsis thaliana |
roots |
Arrays |
ACC-treated root vs. control root |
treated vs untreated comparison |
6 |
| RA05-02_Erwinia |
Regulation of the Arabidopsis transcriptome by the type three secretion system (TTSS) of Erwinia amylovora |
Arabidopsis thaliana |
rosette |
Arrays |
Erwinia |
normal vs disease comparison |
12 |
| RA05-03_SGS |
Transcriptome analysis of two mutants rdr6/sgs2 and sgs3 impaired in post-transcriptional gene silencing (PTGS) |
Arabidopsis thaliana |
flower |
Arrays |
SGS2_and_3 |
gene knock in (transgenic) |
20 |
| RA05-04_Meiocytes |
Transcriptomic of meiocytes. |
Arabidopsis thaliana |
meiocyte |
Arrays |
Meiocyte transcriptome |
organ comparison |
12 |
| RA05-04_Meiocytes |
Transcriptomic of meiocytes. |
Arabidopsis thaliana |
rosette |
Arrays |
Meiocytes |
total transcriptome knowledge |
2 |
| RA05-05_Procuste |
Identification of genes involved in cell wall integrity signalling in Arabidopsis dark-grown hypocotyls
|
Arabidopsis thaliana |
whole plant |
Arrays |
Transcriptome Analysis of prc1 or the1 and prc1_the1 |
gene knock out |
8 |
| RA05-06_LIF |
LIF: Comparisons of transcritomic profils betweeen related mutants. |
Arabidopsis thaliana |
aerial |
Arrays |
LIF |
gene knock in (transgenic),organ comparison |
32 |
| RA05-07_Stifenia |
Effects of Stifenia pretreatment on Arabidopsis thaliana resistance against Fusarium oxysporum pv rafani |
Arabidopsis thaliana |
rosette |
Arrays |
Stifenia |
treated vs untreated comparison |
8 |
| RA05-08_Seaweed |
Seaweed extract impact on plant growth and nitrogen metabolism. |
Arabidopsis thaliana |
roots |
Arrays |
Seaweed extract and hydroponically grown Arabidopsis plants |
treated vs untreated comparison |
12 |
| RA05-09_Urea |
Urea impact on the nitrogen metabolism of plant and on the nitrogen transport systems |
Arabidopsis thaliana |
roots |
Arrays |
Urea |
treated vs untreated comparison |
12 |
| RA05-10_NRT2.7 |
atnrt2.7 v and atnrt2.7 s in a low and high nitrogen regime. |
Arabidopsis thaliana |
aerial |
Arrays |
atnrt2.7 |
gene knock out |
16 |
| RA05-12_NAR2 |
Atnar2.1-1 response to transfer on low nitrate condition |
Arabidopsis thaliana |
aerial |
Arrays |
atnar2.1-1 |
dose response,gene knock out |
16 |
| RA06-02_StayGreen |
Eskimo gene characterisation. |
Arabidopsis thaliana |
rosette |
Arrays |
Drought and salt stress response |
gene knock out,treated vs untreated comparison |
14 |
| RA06-03_DspA-Erwinia |
Regulation of the Arabidopsis transcriptome by the type three effector DspA/E of Erwinia amylovora. |
Arabidopsis thaliana |
rosette |
Arrays |
DspA/E of Erwinia amylovora |
wt vs mutant comparison |
10 |
| RA06-04_BOS1 |
BOS1 signaling pathway in Arabidopsis thaliana / Erwinia chrysanthemi interaction |
Arabidopsis thaliana |
aerial |
Arrays |
Erwinia chrysanthemi treatments |
normal vs disease comparison |
21 |
| RA06-05_Potyvirus-Ecotypes |
Transcriptionnal response to potyviruses infection in Arabidopsis |
Arabidopsis thaliana |
rosette |
Arrays |
Arabidopsis ecotypes |
normal vs disease comparison |
12 |
| RA06-05_Potyvirus-Ecotypes |
Transcriptionnal response to potyviruses infection in Arabidopsis |
Arabidopsis thaliana |
rosette |
Arrays |
Potyvirus effect |
normal vs disease comparison |
10 |
| RA07-01_PRX34 |
Modifications of transcriptome in primary floral stem of Arabidopsis thaliana deregulated for a peroxydase involved in the lignification. |
Arabidopsis thaliana |
stem |
Arrays |
Primary Floral Stem 40cm |
normal vs transgenic comparaison |
3 |
| RA07-01_PRX34 |
Modifications of transcriptome in primary floral stem of Arabidopsis thaliana deregulated for a peroxydase involved in the lignification. |
Arabidopsis thaliana |
stem |
Arrays |
Primary Floral Stem 20cm |
normal vs transgenic comparaison |
6 |
| RA07-02_ABA2 |
Analysis of the role of maternal and embryonic ABA in seeds. |
Arabidopsis thaliana |
seed |
Arrays |
Maternal/embryonic ABA-1 |
gene knock out,treated vs untreated comparison |
8 |
| RA07-03_ABA4 |
Analyse of arabidopsis mutants and transforming affected in the synthesis of abscissic acid. |
Arabidopsis thaliana |
aerial |
Arrays |
ABA4/1 |
gene knock in (transgenic),gene knock out |
8 |
| RA07-05_MYB82 |
Fonctionnal caracterization of the transcription factor VvMYB82 |
Arabidopsis thaliana |
flower |
Arrays |
fonctional caracterization of VvMYB82 |
wt vs mutant comparison |
4 |
| RA08-01_CPL1 |
Transcriptome analysis of fry2 mutants. |
Arabidopsis thaliana |
whole plant |
Arrays |
Transcriptome analysis of fry2 mutants |
gene knock out |
8 |
| RA08-02_Clavata-Ralstonia |
Studies of two mutants for clavata genes |
Arabidopsis thaliana |
whole plant |
Arrays |
Clavata-Ralstonia |
wt vs mutant comparison |
12 |
| RA08-03_Kim |
Differential expression in laccase mutants of Arabidopsis thaliana |
Arabidopsis thaliana |
stem |
Arrays |
Laccases |
wt vs mutant comparison |
11 |
| RA09-01_QTLleafgrowth |
Studying the transcriptional consequences of a QTL for shoot growth (SG3, SG1).
Studying the transcriptional consequences of a QTL for shoot growth under mannitol condition (EGO3). |
Arabidopsis thaliana |
aerial |
Arrays |
SG1-SG3 |
genotype comparaison |
8 |
| RA09-01_QTLleafgrowth |
Studying the transcriptional consequences of a QTL for shoot growth (SG3, SG1).
Studying the transcriptional consequences of a QTL for shoot growth under mannitol condition (EGO3). |
Arabidopsis thaliana |
aerial |
Arrays |
EGO3 |
genotype comparaison |
4 |
| RA09-02_TCTP |
Transcriptomic analyses approach to identify genes associated with organ growth downstream TCTP in Arabidopsis |
Arabidopsis thaliana |
rosette |
Arrays |
knockout |
gene knock out |
4 |
| RA09-02_TCTP |
Transcriptomic analyses approach to identify genes associated with organ growth downstream TCTP in Arabidopsis |
Arabidopsis thaliana |
rosette |
Arrays |
RNAi |
normal vs rnai mutant comparaison |
4 |
| RA09-02_TCTP |
Transcriptomic analyses approach to identify genes associated with organ growth downstream TCTP in Arabidopsis |
Arabidopsis thaliana |
rosette |
Arrays |
Over Expression |
gene knock in (transgenic) |
4 |
| RA09-03_SGS |
Transcriptome analysis of mutants impaired in post-transcriptional gene silencing (PTGS). |
Arabidopsis thaliana |
aerial |
Arrays |
mutants versus wt |
gene knock in (transgenic) |
16 |
| RA10-01_Laccases |
Differential expression in laccase mutants of Arabidopsis thaliana |
Arabidopsis thaliana |
stem |
Arrays |
Laccase mutations |
normal vs knock out comparison |
12 |
| RA10-02_Viromouv |
Analysis of the genic expression modifications of Arabidopsis Companion cells infected by plants viruses |
Arabidopsis thaliana |
protoplast,rosette |
Arrays |
Viromouv |
normal vs disease comparison |
12 |
| RA10-03_Eliciteur |
Effect of oligosaccharide treatments on gene expression. |
Arabidopsis thaliana |
rosette |
Arrays |
Oligosaccharide treatment - 24 hpt |
treated vs untreated comparison |
36 |
| RA10-04_Roots |
Root molecular responses of nitrate transporter mutants |
Arabidopsis thaliana |
roots |
Arrays |
WS vs Clca2/35A2/352.7 |
gene knock out,genotype comparaison,normal vs transgenic comparaison |
16 |
| RA11-01_prgh |
Transcriptomic analysis of Arabidopsis genes after treatment with Salmonella 14028s and Salmonella type three secretion system (T3SS) mutant prgh |
Arabidopsis thaliana |
whole plant |
Arrays |
comparison between Salmonella Wild type 14028s and Salmonella mutant prgh in Arabidopsis infection. |
time course,treated vs untreated comparison |
30 |
| RA11-04_QTL |
Functional characterization of Shoot Growth 1 (Sg1) |
Arabidopsis thaliana |
whole plant |
Arrays |
Study of the transcriptional consequences of a growth QTL candidate (Sg1) |
gene knock out |
6 |
| RA12-01_mut_flg |
FLG-OoPTIMICE |
Arabidopsis thaliana |
rosette |
Arrays |
INRA12-01_mut-flg |
gene knock in (transgenic) |
30 |
| RA12-03_Raptor-NaCl |
Response to salt stress of Raptor mutants |
Arabidopsis thaliana |
whole plant |
Arrays |
Response to salt stress of Raptor mutants |
gene knock out,treated vs untreated comparison |
6 |
| RA12-05_mut_flg_II |
FLG-MPKs |
Arabidopsis thaliana |
whole plant |
Arrays |
INRA12-05_mut_flg_II |
gene knock out,normal vs mutant comparison,treated vs untreated comparison |
24 |
| RA12-06_myb118 |
Identification of genes misregulated in developing seeds of Arabidopsis in response to the myb118 mutation. |
Arabidopsis thaliana |
seed |
Arrays |
myb118 mutation |
normal vs transgenic comparaison |
8 |
| RA14-02_mkk3-ABA |
MKK3-ABA |
Arabidopsis thaliana |
seedling |
Arrays |
Identification of the miss-regulated genes in mkk3 under ABA treatment. |
gene knock out,treated vs untreated comparison |
12 |
| RA14-04_nced |
ABA signaling in Arabidopsis seeds |
Arabidopsis thaliana |
seed |
Arrays |
ABAseed |
gene knock out,genomic comparison |
9 |
| RA14-05_Multipass |
MULTIPASS |
Arabidopsis thaliana |
aerial,rosette |
Arrays |
Effect of N nutrition of Arabidopsis response to Erwinia infection |
normal vs disease comparison,treated vs untreated comparison |
8 |
| RA15-01_MYB92 |
Identification of genes misregulated in developing seeds of Arabidopsis in response to the myb92 mutation and to MYB92 overexpression. |
Arabidopsis thaliana |
seed |
Arrays |
Identification of genes misregulated to myb92 mutant and MYB92 OE. |
gene knock in (transgenic),gene knock out,normal vs transgenic comparaison |
6 |
| RA15-03_OXPMT7-7 |
Impact of Brachypodium acyl-transferases. |
Arabidopsis thaliana |
stem |
Arrays |
Acyltransferase Brachypodium-Arabidopsis |
normal vs transgenic comparaison |
6 |
| RA15-04_ELIM1 |
Identification of genes differentiallty expressed in mur1 basal stems |
Arabidopsis thaliana |
stem |
Arrays |
transcription of ectopic lignification |
genotype comparaison |
6 |
| RA15-06_OXMYC4 |
AtMYC4 overexpression in Arabidopsis (ws) |
Arabidopsis thaliana |
stem |
Arrays |
AtMYC4 overexpression in Arabidopsis (ws) |
normal vs transgenic comparaison |
6 |
| RA15-07_BurxCol_465 |
RA15-07_BurxCol_465 |
Arabidopsis thaliana |
caulin leaf |
Arrays |
BurxCol-465 |
gene knock out |
4 |
| RA16-01_MKK3_wounding |
Identification of MKK3-dependent wonding-induced genes |
Arabidopsis thaliana |
aerial |
Arrays |
Identification of MKK3-dependent wonding-induced genes |
gene knock out,genotype comparaison,normal vs transgenic comparaison,treated vs untreated comparison |
12 |
| RA16-03_ROTENONE |
Effect of the inhibition of the mitochondrial respiratory chain complex I (CI) on shoot initiation on protoplast-derived calli |
Arabidopsis thaliana |
callus |
Arrays |
Rotenone |
time course,treated vs untreated comparison |
18 |
| RA16-03_ROTENONE |
Effect of the inhibition of the mitochondrial respiratory chain complex I (CI) on shoot initiation on protoplast-derived calli |
Arabidopsis thaliana |
cell culture/primary cell |
Arrays |
Rotenone_Complex I mutants |
gene knock out,genotype and ecotype comparison,time course |
12 |
| RA16-04_3WD40 |
Gene disruption in a triple WD40 mutant. |
Arabidopsis thaliana |
stem |
Arrays |
Stem transcriptome in a triple WD40 mutant. |
genotype comparaison |
4 |
| RS03-01_Onc6b |
Transcriptome alterations by the 6b oncogene of Agrobacterium |
Arabidopsis thaliana |
rosette |
Arrays |
Dex-GVG |
gene knock in (transgenic) |
2 |
| RS03-01_Onc6b |
Transcriptome alterations by the 6b oncogene of Agrobacterium |
Arabidopsis thaliana |
rosette |
Arrays |
Oncogene_effect |
gene knock in (transgenic) |
6 |
| RS03-02_Phospholipases |
Identification of genes induced with the cold via the ways of indication of the phospholipases C and D. |
Arabidopsis thaliana |
cell culture/primary cell |
Arrays |
Phospholipases 22°C |
treated vs untreated comparison |
15 |
| RS03-02_Phospholipases |
Identification of genes induced with the cold via the ways of indication of the phospholipases C and D. |
Arabidopsis thaliana |
cell culture/primary cell |
Arrays |
Phospholipases 4°C |
treated vs untreated comparison |
18 |
| RS04-01_CytC |
The cytochrome pathway and cytochrome C biogenesis |
Arabidopsis thaliana |
rosette |
Arrays |
CCME |
gene knock in (transgenic) |
5 |
| RS04-01_CytC |
The cytochrome pathway and cytochrome C biogenesis |
Arabidopsis thaliana |
cell culture/primary cell |
Arrays |
Antimycine A |
treated vs untreated comparison |
5 |
| RS04-02_NTR |
Transcriptomic study of a thioredoxin reductase knock-out mutant. |
Arabidopsis thaliana |
whole plant |
Arrays |
NTR |
gene knock out,wt vs mutant comparison |
6 |
| RS04-04_SKP2_CUL4 |
Functional analysis of the SKP2 and CUL4 proteins |
Arabidopsis thaliana |
whole plant |
Arrays |
comparison_Cul4_As_dark_light |
gene knock out,normal vs antisens mutant comparison |
12 |
| RS04-04_SKP2_CUL4 |
Functional analysis of the SKP2 and CUL4 proteins |
Arabidopsis thaliana |
whole plant |
Arrays |
comparison_Cul4_As_light |
gene knock out,normal vs antisens mutant comparison |
9 |
| RS04-04_SKP2_CUL4 |
Functional analysis of the SKP2 and CUL4 proteins |
Arabidopsis thaliana |
cotyledons |
Arrays |
comparison_Col0vsSKP2 |
wt vs mutant comparison |
6 |
| RS04-05_Nickel |
Effect of nicotianamine over-accumulation in standard condition and in response to nickel treatment |
Arabidopsis thaliana |
roots |
Arrays |
Nickel_Root |
gene knock in (transgenic) |
4 |
| RS04-05_Nickel |
Effect of nicotianamine over-accumulation in standard condition and in response to nickel treatment |
Arabidopsis thaliana |
aerial |
Arrays |
Nickel_Leaf |
gene knock in (transgenic),organ comparison |
2 |
| RS04-06_CDT1 |
Characterization of the AtCDT1a and AtCDT1b by RNAi |
Arabidopsis thaliana |
aerial |
Arrays |
CDT1 |
normal vs rnai mutant comparaison |
4 |
| RS04-07_Set-1 |
Functional analysis of protein SET in Arabidopsis |
Arabidopsis thaliana |
whole plant |
Arrays |
Comparison WT-set mutants |
normal vs rnai mutant comparaison |
8 |
| RS04-08_NtKis |
CKI role in plant development |
Arabidopsis thaliana |
whole plant |
Arrays |
Nt-Kis |
gene knock in (transgenic) |
4 |
| RS04-09_hahb4 |
Identification of targets of the transcription factor hahb-4 in relation to abiotic stress |
Arabidopsis thaliana |
aerial |
Arrays |
Water stress |
gene knock in (transgenic),treated vs untreated comparison |
8 |
| RS04-10_Oxydative--stress |
Involvement of small non coding RNAs in Arabidopsis responses to oxidative stress |
Arabidopsis thaliana |
cell culture/primary cell |
Arrays |
time course H2O2 traitement |
treated vs untreated comparison |
8 |
| RS05-04_salicylic-acid |
Role of phosphatidylinositol 4-kinase |
Arabidopsis thaliana |
cell culture/primary cell |
Arrays |
Modification of response to salicylic acid by wortmannin treatment |
dose response,treated vs untreated comparison |
42 |
| RS05-05_Atrazine |
Sucrose effects on xenobiotic tolerance in Arabidopsis thaliana, a CATMA study.
Transcriptomic analysis of sucrose effects on xenobiotic tolerance in Arabidopsis thaliana.
|
Arabidopsis thaliana |
whole plant |
Arrays |
Effect of atrazine and sucrose on Arabidopsis transcriptome |
treated vs untreated comparison |
12 |
| RS05-06_DGPP |
DGPP regulated genes. Identification of diacylglycerol pyrophosphate regulated genes in ABA signaling. |
Arabidopsis thaliana |
cell culture/primary cell |
Arrays |
DGPP - 2 |
treated vs untreated comparison |
8 |
| RS05-06_DGPP |
DGPP regulated genes. Identification of diacylglycerol pyrophosphate regulated genes in ABA signaling. |
Arabidopsis thaliana |
cell culture/primary cell |
Arrays |
DGPP |
treated vs untreated comparison |
18 |
| RS05-07_Nucleolin |
Characterization of a nucleolin gene in Arabidopsis thaliana mutant line |
Arabidopsis thaliana |
whole plant |
Arrays |
Analysis of Atnuc-L1 mutant line |
gene knock out |
4 |
| RS05-08_NO |
Transcriptionnal impact of Cd-induced nitric oxide synthesis. |
Arabidopsis thaliana |
roots |
Arrays |
NO |
treated vs untreated comparison |
15 |
| RS05-09_Histone-acetylase |
Studies of the gene expression profil in the simple mutants gcn5 and hd1 and in the double mutant gcn5 hd1. |
Arabidopsis thaliana |
aerial |
Arrays |
GCN5 |
gene knock out |
4 |
| RS05-09_Histone-acetylase |
Studies of the gene expression profil in the simple mutants gcn5 and hd1 and in the double mutant gcn5 hd1. |
Arabidopsis thaliana |
aerial |
Arrays |
GCN5_2 |
gene knock in (transgenic) |
3 |
| RS05-10_AtrazineII |
Sucrose effects on xenobiotic tolerance in Arabidopsis thaliana, a CATMA study.Temporal analysis of sucrose effects on atrazine tolerance in Arabidopsis thaliana. |
Arabidopsis thaliana |
whole plant |
Arrays |
Time course analysis of atrazine and sucrose effects |
time course,treated vs untreated comparison |
21 |
| RS05-11_Hypocotyls |
Plant cell wall and development. Comparison of transcript levels between elongating (5 day-old) and elongated (11 day-old) etiolated hypocotyls. |
Arabidopsis thaliana |
hypocotyl |
Arrays |
Hypocotyls |
organ comparison |
6 |
| RS05-12_SetII |
Functional characterization of Arabidopsis NAP1/SET genes |
Arabidopsis thaliana |
whole plant |
Arrays |
sdg25 and sdg26 |
gene knock out |
9 |
| RS05-12_SetII |
Functional characterization of Arabidopsis NAP1/SET genes |
Arabidopsis thaliana |
whole plant |
Arrays |
all comparison |
gene knock out |
15 |
| RS05-13_Hag4 |
Homeostasie of histone acetylation and the control of transcription. |
Arabidopsis thaliana |
roots |
Arrays |
Transcriptome of hag4 root |
gene knock out |
6 |
| RS05-14_VDAC1 |
Functions of AtVDAC1 and its partner p26 in Arabidopsis thaliana.
Identification of genes involved in AtVDAC1 signalling pathway in response to salicylic acid. |
Arabidopsis thaliana |
whole plant |
Arrays |
vdac1-p26 |
gene knock out,treated vs untreated comparison |
8 |
| RS05-15_Iron_signaling |
Responses to iron excess in plants: identification of genes involved in iron homeostasis |
Arabidopsis thaliana |
cell culture/primary cell |
Arrays |
RS05-15_Iron |
time course |
7 |
| RS05-16_KdoT |
Analysis of an Arabidopsis Kdo transferase mutant |
Arabidopsis thaliana |
aerial |
Arrays |
Analysis of an Arabidopsis Kdo transferase mutant |
gene knock out |
2 |
| RS06-01_PLD |
Fonctional analysis of the double mutant phospholipasezeta1,2 in response to abiotic stress |
Arabidopsis thaliana |
whole plant |
Arrays |
PLD |
gene knock out,treated vs untreated comparison |
48 |
| RS06-03_Cd-miRNA |
cadmium stress on suspension cells. |
Arabidopsis thaliana |
cell culture/primary cell |
Arrays |
Cadmium-miRNA |
treated vs untreated comparison |
8 |
| RS06-04_wat1-1 |
Transcriptomic analyses of the wat1-1 nodulin-like knock out mutant |
Arabidopsis thaliana |
seedling |
Arrays |
wat1-1 |
gene knock out,organ comparison |
8 |
| RS06-05_Arabinofuranosidase |
Comparative analysis of mutant and overexpressor of the At3g10740 gene, alpha-L-arabinofuranosidase |
Arabidopsis thaliana |
stem |
Arrays |
Overexpressor vs WT |
gene knock in (transgenic) |
2 |
| RS06-05_Arabinofuranosidase |
Comparative analysis of mutant and overexpressor of the At3g10740 gene, alpha-L-arabinofuranosidase |
Arabidopsis thaliana |
stem |
Arrays |
Mutant vs WT |
gene knock out |
2 |
| RS06-06_miRNA |
Gene profiling upon biotic stress treatment.
Gene profiling in microRNA mutants.
Gene profiling in siRNA mutants. |
Arabidopsis thaliana |
seedling |
Arrays |
Flg22 time course |
time course,treated vs untreated comparison |
20 |
| RS06-06_miRNA |
Gene profiling upon biotic stress treatment.
Gene profiling in microRNA mutants.
Gene profiling in siRNA mutants. |
Arabidopsis thaliana |
seedling |
Arrays |
Flg22 treatment & mutants |
time course,total transcriptome knowledge |
28 |
| RS06-06_miRNA |
Gene profiling upon biotic stress treatment.
Gene profiling in microRNA mutants.
Gene profiling in siRNA mutants. |
Arabidopsis thaliana |
seedling |
Arrays |
Comparisons Wt-mutants 1 |
gene knock out |
6 |
| RS06-06_miRNA |
Gene profiling upon biotic stress treatment.
Gene profiling in microRNA mutants.
Gene profiling in siRNA mutants. |
Arabidopsis thaliana |
whole plant |
Arrays |
Flg22 treatment & mutants 2 |
treated vs untreated comparison |
12 |
| RS06-06_miRNA |
Gene profiling upon biotic stress treatment.
Gene profiling in microRNA mutants.
Gene profiling in siRNA mutants. |
Arabidopsis thaliana |
seedling |
Arrays |
Comparisons Wt-mutants 1 and 3 |
gene knock out |
8 |
| RS06-06_miRNA |
Gene profiling upon biotic stress treatment.
Gene profiling in microRNA mutants.
Gene profiling in siRNA mutants. |
Arabidopsis thaliana |
seedling |
Arrays |
Comparisons Wt-mutants 2 |
gene knock out |
8 |
| RS06-06_miRNA |
Gene profiling upon biotic stress treatment.
Gene profiling in microRNA mutants.
Gene profiling in siRNA mutants. |
Arabidopsis thaliana |
seed |
Arrays |
Agrobacterium treatment |
normal vs disease comparison,organ comparison |
6 |
| RS06-06_miRNA |
Gene profiling upon biotic stress treatment.
Gene profiling in microRNA mutants.
Gene profiling in siRNA mutants. |
Arabidopsis thaliana |
seedling |
Arrays |
Flagellin experiment in dcl2-dcl3-dcl4 mutant background |
treated vs untreated comparison |
12 |
| RS06-06-miRNA_CaMV_treatment |
Gene profiling durinig CaMV infection. |
Arabidopsis thaliana |
rosette |
Arrays |
CaMV treatment |
gene knock out,normal vs disease comparison |
7 |
| RS06-07_DELLA |
DELLAs contribute to salt stress responses |
Arabidopsis thaliana |
seedling |
Arrays |
DELLA-regulation of salt stress responses |
dose response,gene knock out,time course |
18 |
| RS07-01_carnitine |
Effect of carnitine on the transcriptome of A. thaliana |
Arabidopsis thaliana |
seedling |
Arrays |
Treatment g-butyrobetaine WT Col.0 |
treated vs untreated comparison |
4 |
| RS07-01_carnitine |
Effect of carnitine on the transcriptome of A. thaliana |
Arabidopsis thaliana |
seedling |
Arrays |
carnitine effect |
treated vs untreated comparison |
12 |
| RS07-02_npc48 |
Analysis of npc48 overexpressing plants. |
Arabidopsis thaliana |
rosette |
Arrays |
Analysis of npc48 overexpressing plants |
gene knock in (transgenic) |
6 |
| RS07-03_APC |
Transcriptome on Arabidopsis APC hypomorphic lines |
Arabidopsis thaliana |
whole plant |
Arrays |
APC Transcriptome |
normal vs rnai mutant comparaison |
6 |
| RS07-04_MIPS |
Cell cycle and cell death interaction in plants : PCNA, AtXRs and AtMIPS pathway. |
Arabidopsis thaliana |
rosette |
Arrays |
AtMIPS mutant/photoperiod |
gene knock out |
8 |
| RS07-05_sphingolipids-cold |
Identification of Sphingolipid regulated genes in cold stress response.
Sphingolipids regulated genes. |
Arabidopsis thaliana |
cell culture/primary cell |
Arrays |
Sphingo-1 |
treated vs untreated comparison |
24 |
| RS07-06_PLC_cold_plant |
The effect of PLC inhibitor on cold responsive transcriptome. |
Arabidopsis thaliana |
whole plant |
Arrays |
PLC_cold_plant |
treated vs untreated comparison |
4 |
| RS07-07_lpp2 |
Gene expression of lpp2 KO mutant in response to ABA. |
Arabidopsis thaliana |
rosette |
Arrays |
ABA-treated lpp2 mutant |
treated vs untreated comparison |
8 |
| RS07-08_Gollum |
Role of the Gollum gene in the plant development |
Arabidopsis thaliana |
caulin leaf |
Arrays |
Trancript profiling in Arabidopsis GOLLUM mutant. |
wt vs mutant comparison |
6 |
| RS07-09_BOU |
bou mutant characterisation.
Autotrophic growth acquisition in the ABOUTDESOUFFLE (bou) mutant. |
Arabidopsis thaliana |
whole plant |
Arrays |
CATMA1-bou |
gene knock in (transgenic),normal vs disease comparison,time course |
10 |
| RS08-01_Met2 |
Involvement of non coding RNAs in the adaptation of root architecture to abiotic stress |
Arabidopsis thaliana |
aerial |
Arrays |
comparative analysis of CATMA chips with a MET2 overexpression line |
organ comparison,wt vs mutant comparison |
8 |
| RS08-02_Nad |
Analysis of the effect of NAD concentration on the transcriptome. |
Arabidopsis thaliana |
rosette |
Arrays |
Dark and Light |
treated vs untreated comparison |
12 |
| RS08-03_Glutathion |
Interactions between H2O2 and glutathion in gene expression. |
Arabidopsis thaliana |
rosette |
Arrays |
Glutathion |
gene knock out |
24 |
| RS08-04_wat1-Ralstonia |
Caracterisation of wat1 mutant |
Arabidopsis thaliana |
roots |
Arrays |
Ralstonia infection |
treated vs untreated comparison |
40 |
| RS08-04_wat1-Ralstonia |
Caracterisation of wat1 mutant |
Arabidopsis thaliana |
roots |
Arrays |
mutant comparison |
wt vs mutant comparison |
12 |
| RS08-05_BAC2 |
bac2 mutant transcriptome modification during osmotic stress |
Arabidopsis thaliana |
rosette |
Arrays |
BAC2-CATMA |
gene knock out,treated vs untreated comparison,wt vs mutant comparison |
8 |
| RS09-01_Det1 |
Expression profile of DET1-1 mutant during photomorphogenesis |
Arabidopsis thaliana |
seedling |
Arrays |
photomorphogenesis |
treatment variations |
10 |
| RS09-02_Quinolinate |
Deregulation of NAD biosynthesis |
Arabidopsis thaliana |
rosette |
Arrays |
Quinolinate |
treated vs untreated comparison,wt vs mutant comparison |
8 |
| RS09-03_ZF1 |
None |
Arabidopsis thaliana |
rosette |
Arrays |
ZF1 experiment |
normal vs transgenic comparaison |
6 |
| RS09-04_PLC_2 |
PI4-kinase and phospholipase C signaling in cold response |
Arabidopsis thaliana |
cell culture/primary cell |
Arrays |
Edelfosine and wortmannin effect at 22°C and 4°C |
treated vs untreated comparison |
13 |
| RS09-06_Silencing-Muntants |
Transcriptome analysis of silencing mutants and endogenous hairpin KO insertion. |
Arabidopsis thaliana |
seedling |
Arrays |
Silencing Mutants |
genotype comparaison |
13 |
| RS09-07_HB6 |
Role of HB6 in plant development |
Arabidopsis thaliana |
seedling |
Arrays |
HB6 |
wt vs mutant comparison |
9 |
| RS09-08_FIE |
Dissecting the role of the polycomb repressory complex in Arabidopsis: Characterisation of PRC2 mutant |
Arabidopsis thaliana |
whole plant |
Arrays |
upregulation of transcripts in the absence of PRC2 repressory complex |
gene knock out |
10 |
| RS09-09_DELLA-dark |
DELLAs contribute to skotomorphogenesis |
Arabidopsis thaliana |
whole plant |
Arrays |
DELLA-regulation in darkness versus light |
gene knock out |
15 |
| RS09-10_FWA |
DNA methylation and small RNAs |
Arabidopsis thaliana |
rosette |
Arrays |
wt vs mutants 09 |
fwa-d,gain of fuction epimutation,gene knock in (transgenic),gene knock out |
14 |
| RS09-10_FWA |
DNA methylation and small RNAs |
Arabidopsis thaliana |
seedling |
Arrays |
oct07 |
gene knock out |
8 |
| RS10-01_RRM |
Transcriptomic study of a quadruple rrm mutant which belong to a new family of AGO hook proteins at Arabidopsis thaliana |
Arabidopsis thaliana |
rosette |
Arrays |
Quadruple RRM experience |
normal vs transgenic comparaison |
4 |
| RS10-02_ros_dme |
Genetic dissection of endosperm development |
Arabidopsis thaliana |
seed |
Arrays |
Genes regulated by ROS and DME |
gene knock out |
8 |
| RS10-03_IND |
Transcriptome profiling upon induction of the transcription factor IND |
Arabidopsis thaliana |
seedling |
Arrays |
Comparison of IND induced vs mock treated seedlings |
induced vs non-induced comparison |
6 |
| RS10-04_MAD |
Transcriptome analysis of miRNA action deficient mutants |
Arabidopsis thaliana |
seedling |
Arrays |
Comparison of transcriptomes in mad mutants |
genotype comparaison |
12 |
| RS10-05_TCV |
Gene profiling of Turnip Crinkle Virus (TCV) siRNA in A.thaliana |
Arabidopsis thaliana |
rosette |
Arrays |
Gene profiling of Turnip Crinkle Virus (TCV) siRNA |
gene knock out,treated vs untreated comparison |
21 |
| RS10-06_CDKA |
cdka mutants |
Arabidopsis thaliana |
aerial |
Arrays |
cdka mutants |
wt vs mutant comparison |
12 |
| RS11-01_NAD |
NAD biosynthesis in Arabidopsis : role of quinolinate phosphoribosyltransferase |
Arabidopsis thaliana |
rosette |
Arrays |
Knock Out Mutant N575260 |
gene knock out |
4 |
| RS11-02_Opine |
Impact of genetically modified plants on bacteria from rhizosphere |
Arabidopsis thaliana |
whole plant |
Arrays |
Septante project |
normal vs transgenic comparaison |
9 |
| RS11-03_Agro |
Quorum-sensing in Agrobacterium-induced tumors |
Arabidopsis thaliana |
stem |
Arrays |
Transcriptomic comparison of tumoric tissues induced by different C58 Agrobacterium lines |
infected vs non infected tissue comparison |
21 |
| RS11-07_Opine2 |
Septante2 |
Arabidopsis thaliana |
stem |
Arrays |
Septante soil |
normal vs transgenic comparaison |
9 |
| RS11-08_NAD2 |
Regulation of NAD biosynthesis in Arabidopsis : role of quinolinate phosphoribosyltransferase. |
Arabidopsis thaliana |
rosette |
Arrays |
Down regulation of QPTgene in Arabidopsis |
normal vs transgenic comparaison |
4 |
| RS11-09_Meotic |
Time course of meiotic gene expression in Arabidopsis |
Arabidopsis thaliana |
aerial |
Arrays |
Time course expression profile of ap1-cal after induction of an AP1-transgene |
time course |
15 |
| RS11-10_URT1 |
Transcriptome comparison between WT and a mutant impaired in RNA uridylation. |
Arabidopsis thaliana |
rosette |
Arrays |
Leaf transcriptome comparison between wt and URT1 (SALK_087647) |
gene knock out |
6 |
| RS11-11_Myb52 |
Transcriptome analysis of atmyb52 mutant vs wild-type |
Arabidopsis thaliana |
stem |
Arrays |
MYB52-2 T-DNA |
normal vs transgenic comparaison |
4 |
| RS12-03_Complex-I |
Analysis of complex I mutants |
Arabidopsis thaliana |
seedling |
Arrays |
Complex I |
gene knock out |
15 |
| RS12-04_RNAnonPolyA |
ANR MITOMANIP |
Arabidopsis thaliana |
whole plant |
Arrays |
nad9 knockdown 1 |
trans-ribozyme-mediated knockdown of a specific mitochondrial rna |
4 |
| RS12-07_PNM1 |
CNRS12-07_PNM1 |
Arabidopsis thaliana |
rosette |
Arrays |
Leaf transcriptome comparison between wt and PNM1DNLS plants |
normal vs transgenic comparaison |
4 |
| RS12-08_cyp715A1 |
Genome-wide transcriptional analysis of cyp715A1 |
Arabidopsis thaliana |
flower bud |
Arrays |
Col-0 vs cyp715A1 |
gene knock out,genotype comparaison |
6 |
| RS13_01_LAO |
Down/up regulation of NAD biosynthesis in Arabidopsis : role of L-Aspartate oxidase |
Arabidopsis thaliana |
rosette |
Arrays |
Down/up regulation of NAD biosynthesis in Arabidopsis and role of L-Aspartate oxidase |
genotype comparaison |
8 |
| RS13-02_Mitomanip |
ANR MITOMANIP |
Arabidopsis thaliana |
whole plant |
Arrays |
Mitomanip microarray experiment 4 |
time course,trans-ribozyme-mediated knockdown of a specific mitochondrial rna vs control |
30 |
| RS14-01_Mitomanip2 |
ANR MITOMANIP |
Arabidopsis thaliana |
whole plant |
Arrays |
Microarray experiment 4 |
time course |
20 |
| TIL-Ath-2011_3 |
HEN2 is a cofactor of the nuclear exosome in Arabidopsis |
Arabidopsis thaliana |
whole plant |
Arrays |
tiling hen2 and mtr4 |
gene knock out,genotype comparaison,normal vs transgenic comparaison |
6 |
| TRI33-LEC1 |
Establishing the network of seed gene expression and analysis of its biodiversity |
Arabidopsis thaliana |
whole plant |
Arrays |
LEC1::GR Induction |
treated vs untreated comparison |
8 |
| TRI33-LEC1 |
Establishing the network of seed gene expression and analysis of its biodiversity |
Arabidopsis thaliana |
whole plant |
Arrays |
WT Dex Induction |
treated vs untreated comparison |
6 |
| TRI38-LAR |
Transcriptomic analysis of the localized acquired resistance phenomenon (LAR) in Arabidopsis Thaliana. |
Arabidopsis thaliana |
rosette |
Arrays |
LAR |
normal vs disease comparison |
6 |
| TRI38-LAR |
Transcriptomic analysis of the localized acquired resistance phenomenon (LAR) in Arabidopsis Thaliana. |
Arabidopsis thaliana |
rosette |
Arrays |
HR |
normal vs disease comparison |
2 |